🔍 Search & Intelligence

• Hybrid Search: Combined full-text and vector similarity powered by Orama, for both single-document and cross-document queries
• AI-Powered Search 🤖: Advanced document analysis with Google Gemini AI for contextual understanding and intelligent insights (optional, requires API key)
• Context Window Retrieval: Fetch surrounding chunks to provide LLMs with richer context

⚡ Performance & Architecture

• Orama Vector DB: Embedded search engine with zero native dependencies — replaces manual JSON storage and cosine similarity
• LRU Embedding Cache: Avoids recomputing embeddings for repeated content and queries
• Parent-Child Chunking: Documents are split into large context-preserving parent chunks and small precise child chunks for vector search — search results include both the matched fragment and the full surrounding context
• Streaming File Reader: Handles large files without high memory usage
• Automatic Migration: Legacy JSON documents are migrated to Orama on first startup — no manual intervention needed

📁 File Management

• Upload processing: Drop .txt, .md, or .pdf files into the uploads folder and process them with a single tool call
• Copy-based storage: Original files are backed up alongside the database
• Local-only storage: All data resides in ~/.mcp-documentation-server/

Quick Start

Configure an MCP client

Example configuration for an MCP client (e.g., Claude Desktop, VS Code):

Quick Start

{
  "mcpServers": {
    "documentation": {
      "command": "npx",
      "args": [
        "-y",
        "@andrea9293/mcp-documentation-server"
      ]
    }
  }
}

Advanced with env vars (all vars are optional)

{
  "mcpServers": {
    "documentation": {
      "command": "npx",
      "args": [
        "-y",
        "@andrea9293/mcp-documentation-server"
      ],
      "env": {
        "MCP_BASE_DIR": "/path/to/workspace",
        "GEMINI_API_KEY": "your-api-key-here",
        "MCP_EMBEDDING_MODEL": "Xenova/all-MiniLM-L6-v2",
        "START_WEB_UI": "true",
        "WEB_PORT": "3080",
      }
    }
  }
}

All environment variables are optional. Without GEMINI_API_KEY, only the local embedding-based search tools are available.

Web UI

The web interface starts automatically on port 3080 when the MCP server launches. Open your browser at:

http://localhost:3080

From the web UI you can:

• 📊 Dashboard — overview of all documents and stats
• 📄 Documents — browse, view, and delete documents
• ➕ Add Document — create documents with title, content, and metadata
• 🔍 Search All — semantic search across all documents
• 🎯 Search in Doc — search within a specific document
• 🤖 AI Search — Gemini-powered analysis (if GEMINI_API_KEY is set)
• 📁 Upload Files — drag & drop files and process them into the knowledge base
• 🪟 Context Window — explore chunks around a specific index

To run the web UI standalone (without the MCP server):

npm run web          # Development (tsx)
npm run web:build    # Production (compiled)

Basic workflow

1. Add documents using add_document or place .txt / .md / .pdf files in the uploads folder and call process_uploads.
2. Search across everything with search_all_documents, or within a single document with search_documents.
3. Use get_context_window to fetch neighboring chunks and give the LLM broader context.

MCP Tools

The server registers the following tools (all validated with Zod schemas):

📄 Document Management

| Tool | Description | | --- | --- | | add_document | Add a document (title, content, optional metadata) | | list_documents | List all documents with metadata and content preview | | get_document | Retrieve the full content of a document by ID | | delete_document | Remove a document, its chunks, database entries, and associated files |

📁 File Processing

| Tool | Description | | --- | --- | | process_uploads | Process all files in the uploads folder (chunking + embeddings) | | get_uploads_path | Returns the absolute path to the uploads folder | | list_uploads_files | Lists files in the uploads folder with size and format info | | get_ui_url | Returns the Web UI URL (e.g. http://localhost:3080) — useful to open the dashboard or to locate the uploads folder from the browser |

🔍 Search

| Tool | Description | | --- | --- | | search_documents | Semantic vector search within a specific document | | search_all_documents | Hybrid (full-text + vector) cross-document search | | get_context_window | Returns a window of chunks around a given chunk index | | search_documents_with_ai | 🤖 AI-powered search using Gemini (requires GEMINI_API_KEY) |

Configuration

Configure via environment variables or a .env file in the project root:

| Variable | Default | Description | | --- | --- | --- | | MCP_BASE_DIR | ~/.mcp-documentation-server | Base directory for data storage | | MCP_EMBEDDING_MODEL | Xenova/all-MiniLM-L6-v2 | Embedding model name | | GEMINI_API_KEY | — | Google Gemini API key (enables search_documents_with_ai) | | MCP_CACHE_ENABLED | true | Enable/disable LRU embedding cache | | START_WEB_UI | true | Set to false to disable the built-in web interface | | WEB_PORT | 3080 | Port for the web UI | | MCP_STREAMING_ENABLED | true | Enable streaming reads for large files | | MCP_STREAM_CHUNK_SIZE | 65536 | Streaming buffer size in bytes (64KB) | | MCP_STREAM_FILE_SIZE_LIMIT | 10485760 | Threshold to switch to streaming (10MB) |

Storage layout

~/.mcp-documentation-server/     # Or custom path via MCP_BASE_DIR
├── data/
│   ├── orama-chunks.msp         # Orama vector DB (child chunks + embeddings)
│   ├── orama-docs.msp           # Orama document DB (full content + metadata)
│   ├── orama-parents.msp        # Orama parent chunks DB (context sections)
│   ├── migration-complete.flag   # Written after legacy JSON migration
│   └── *.md                     # Markdown copies of documents
└── uploads/                     # Drop .txt, .md, .pdf files here

Embedding Models

Set via MCP_EMBEDDING_MODEL:

| Model | Dimensions | Notes | | --- | --- | --- | | Xenova/all-MiniLM-L6-v2 | 384 | Default — fast, good quality | | Xenova/paraphrase-multilingual-mpnet-base-v2 | 768 | Recommended — best quality, multilingual |

Models are downloaded on first use (~80–420 MB). The vector dimension is determined automatically from the provider.

⚠️ Important: Changing the embedding model requires re-adding all documents — embeddings from different models are incompatible. The Orama database is recreated automatically when the dimension changes.

Architecture

Server (FastMCP, stdio)
  ├─ Web UI (Express, port 3080)
  │    └─ REST API → DocumentManager
  └─ MCP Tools
       └─ DocumentManager
            ├─ OramaStore          — Orama vector DB (chunks DB + docs DB + parents DB), persistence, migration
            ├─ IntelligentChunker  — Parent-child chunking (code, markdown, text, PDF)
            ├─ EmbeddingProvider   — Local embeddings via @xenova/transformers
            │    └─ EmbeddingCache — LRU in-memory cache
            └─ GeminiSearchService — Optional AI search via Google Gemini

• OramaStore manages three Orama instances: one for document metadata/content, one for child chunks with vector embeddings, and one for parent chunks (context sections). All are persisted to binary files on disk and restored on startup.
• IntelligentChunker implements the Parent-Child Chunking pattern: documents are first split into large parent chunks that preserve full context (sections, paragraphs), then each parent is further split into small child chunks for precise vector search. At query time, results are deduplicated by parent so that the LLM receives both the matched fragment and the broader context.
• EmbeddingProvider lazily loads a Transformers.js model for local inference — no API calls needed.

Development

git clone https://github.com/andrea9293/mcp-documentation-server.git
cd mcp-documentation-server
npm install

npm run dev       # FastMCP dev mode with hot reload
npm run bu