by yogsoth-ai
800+ pure-markdown skills for autonomous AI research. Non-linear orchestration with backtracking, 4-layer military hierarchy (Campaign → Strategy → Tactic → SOP), 5 MCP integrations. The AI is the researcher — you set the direction.
# Add to your Claude Code skills
git clone https://github.com/yogsoth-ai/de-anthropocentric-research-engineGuides for using ai agents skills like de-anthropocentric-research-engine.
Science is dying because the human is in the way. Not through malice. Not through stupidity. Through the structural limitations of a cognitive architecture that evolved to track prey on a savanna, not to unify quantum mechanics and general relativity. Nothing human makes it out of the lab. That is not a threat. It is a liberation. The heaviest chain on science was always the one we called ourselves.
The complete research orchestration system for AI-native science.
DARE is not a tool that helps you do research. It is the researcher. You set the direction — DARE searches, reads, discovers gaps, generates hypotheses, stress-tests them, designs experiments, and produces executable research specs. Autonomously. Iteratively. Without asking for permission.
This repository is the single-clone distribution of the entire Yogsoth AI research ecosystem: 800+ pure-markdown skills spanning 12 specialized repos, unified under one orchestrator. Clone once, get everything. The ecosystem also includes custom MCP servers (semantic-scholar-mcp, wiki-vault) published as npm packages — this repo declares them as dependencies so npm install pulls everything you need.
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The bottleneck in modern research is not data or compute — it's the human in the loop. Every existing "AI research assistant" still requires a human to decide what to search, what to read, which gaps matter, and which ideas are worth pursuing. DARE removes this bottleneck entirely. The human provides only the initial direction; everything after that is autonomous.
Human desire is mimetic (Girard): researchers don't choose hypotheses rationally — they imitate what's fashionable. Human institutions filter for conformity, not truth. The result: 90% decline in scientific disruptiveness since 1945 (Park et al., 2023), while researcher headcount exploded. DARE's response is architectural: remove the mimetic agent from the center of the knowledge-production process. The AI has no career to protect, no disciplinary identity to defend, no cognitive ceiling on how many fields it can hold in working memory at once.
The human's role shifts to oracle (providing intuition sparks when consulted) and guardian (maintaining ethical floors and sanity checks). The ceiling is AI ambition. The floor is human wisdom.
For the full philosophical argument, see assets/DE-ANTHROPOCENTRIC.md.
DARE's architecture follows a military command hierarchy — not because research is war, but because the decomposition pattern is remarkably effective for autonomous multi-stage operations:
Campaign (8) → "Take that hill" → WHAT to research (full research stage)
Strategy (40+) → "Flank from the east" → WHEN and WHY (iteration loops, stopping conditions)
Tactic (100+) → "Squad A cover, B move" → HOW to combine (orchestrates multiple SOPs)
SOP (600+) → "Fire, reload, advance" → HOW to execute (single-responsibility operations)
Each layer has a single concern and calls only the layer directly below it. A Strategy never touches MCP tools directly; a Tactic never decides research direction. This strict layering means every component is independently testable, replaceable, and composable.
Campaigns are the 8 stages of the research pipeline — from north-star-crystallization through experiment-execution. Each campaign owns a complete research phase and defines its own completion criteria, backtrack conditions, and context protocol.
Strategies are the iteration engines within campaigns. A literature survey strategy manages the search-read-reflect loop; a gap analysis strategy manages coverage scoring and saturation detection. Strategies hold state (ledgers, budgets) and decide when to stop.
Tactics combine multiple SOPs into coherent workflows. A "cross-domain collision" tactic orchestrates domain scanning, analogy extraction, forced bridge construction, and blend evaluation into a single creative operation.
SOPs are atomic, single-responsibility operations. Each SOP wraps one conceptual action: run one search, score one hypothesis, extract one analogy. 600+ SOPs provide the granular building blocks that higher layers compose.
Every existing autonomous research system — AI Scientist v2 (Sakana), AI-Researcher (HKUDS), Agent Laboratory, Dolphin, ARIS — implements a fixed pipeline: stages execute in a predetermined order, and the agent's autonomy is confined to local decisions within a single stage. Backtracking, when it exists at all, means retrying the current step — not returning from experiment design to literature review because the knowledge base turned out to be insufficient.
DARE is not a pipeline. It is an arsenal — a strategy book that the AI reads, then decides how to act.
What this means concretely:
In a pipeline system, the workflow is hardcoded: literature → gap → hypothesis → experiment. The agent has no say in the order, cannot skip stages, and cannot go back. If the experiment phase reveals that the literature review missed a critical subfield, the system has no mechanism to return and fix it.
In DARE, the Research Spec defines backtrack conditions for every stage — explicit rules like "if stress-test invalidates >50% of hypotheses, return to hypothesis-formation." The executing agent has full cross-stage routing authority: it reads the spec, assesses the current research state, and decides which campaign to invoke next, which strategies within that campaign to combine, and when the current path has failed hard enough to warrant retreat.
Within each campaign, the agent faces not one method but many. A gap-analysis campaign offers 15+ detection methods (coverage mapping, white-space identification, boundary unfolding, niche analysis...). A creative-ideation campaign offers 31+ generation techniques (SCAMPER, TRIZ, biomimicry, morphological analysis, concept blending...). The agent selects and combines methods based on the research context — not because "more is better," but because different research problems demand different tools, and a system locked to one approach per phase cannot adapt.
The human's role: approve the spec (including its backtrack conditions and recommended campaign combinations) before execution begins. After that, the agent navigates the research space autonomously within the ±10% deviation bounds defined in the spec. If it needs to deviate further — backtrack to an earlier stage, skip a stage entirely, or add one — it asks.
This is the fundamental architectural difference. Pipelines assume the research process is predictable. Arsenals assume it is not.
Traditional research plans are prose documents that humans interpret. DARE produces Research Specs — documents that are simultaneously human-readable and machine-executable:
- [ ]) tracks progress across sessionsA spec is a contract between the human who approved it and the CC instance that executes it. Session recovery is automatic: read the spec, find the first unchecked box, read the latest context checkpoint, resume.